Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs9843268 chr3:197134110 A/G 7.94E-7 178 1.78 13.17 15.67 KM Plot
PAAD rs9886500 chr8:110467728 C/G 6.24E-5 172 15.42 15.67 5.1 KM Plot
PAAD rs9911879 chr17:19990142 T/A 5.01E-13 177 15.4 17.17 0.83 KM Plot
PAAD rs9927407 chr16:68744532 A/G 8.17E-5 176 16.17 14.73 5.97 KM Plot
PAAD rs9933844 chr16:68747001 G/A 8.17E-5 176 16.17 14.73 5.97 KM Plot
PAAD rs9936682 chr16:68748223 A/G 8.17E-5 176 16.17 14.73 5.97 KM Plot
PAAD rs9936721 chr16:68748027 G/A 4.6E-5 177 16.15 14.18 5.97 KM Plot
PAAD rs9937146 chr16:86803910 A/G 2.82E-10 175 15.43 16.2 2.2 KM Plot
PAAD rs9968597 chr5:127455383 C/G 0.000152 178 16.17 13.95 7.87 KM Plot
PAAD rs9996449 chr4:2401347 C/T 0 177 0.4 16.1 15.4 KM Plot
PCPG rs10019712 chr4:4474201 G/A 0.000192 177 24.85 25.97 19.22 KM Plot
PCPG rs10048179 chr17:50311924 C/T 6.48E-5 177 25.4 28.47 14.47 KM Plot
PCPG rs10048182 chr17:50312430 A/G 6.48E-5 177 25.4 28.47 14.47 KM Plot
PCPG rs10052407 chr5:50591476 C/T 1.69E-5 174 25.17 27.13 36.73 KM Plot
PCPG rs1005889 chr14:74650360 C/T 2.02E-5 177 25.4 28.3 10.3 KM Plot